Import Extracted Study Data into a metawoRld Project
df_import_extraction.RdReads cached extraction JSON data for a study, validates it against the
project schema, optionally merges with cached metadata, transforms it,
and imports it into the metawoRld project structure using
metawoRld::add_study_data.
Usage
df_import_extraction(
identifier,
metawoRld_path,
overwrite = FALSE,
validate_json = TRUE,
merge_metadata = TRUE
)Arguments
- identifier
Character string. The DOI or PMID of the study to import.
- metawoRld_path
Character string. Path to the root of the target metawoRld project.
- overwrite
Logical. Passed to
metawoRld::add_study_data. If a directory for the study already exists inmetawoRld/data/, should its contents be overwritten? Defaults toFALSE.- validate_json
Logical. Should the extracted JSON content be validated against the project schema and internal links before importing? Defaults to
TRUE.- merge_metadata
Logical. Should cached metadata (Title, Authors, Year, Journal, DOI, Abstract fetched via
df_fetch_metadata) be merged into the metadata section from the extraction, prioritizing the fetched values for these specific fields? Defaults toTRUE.